Preparing an extraction buffer with PMSF and 2-mercaptoethanol

In summary, the task at hand is to find the appropriate volumes of 0.10 M PMSF and 14.3 M 2-mercaptoethanol to add to a 100 mL solution of 10 mM Tris-HCl and 1 mM EDTA with pH 7.4. Two approaches can be used to solve this problem, either by calculating both volumes assuming the volume of the main solution remains unchanged, or by adding one solution and calculating the volume of the other based on the resulting total volume. It may be necessary to dilute the 2-mercaptoethanol in two stages. Precise calculations may not be necessary for this task.
  • #1
samzorz
1
0

Homework Statement



We have a 100 mL of 10 mM Tris-HCl, 1 mM EDTA, pH = 7.4

We're supposed to add PMSF to a final concentration of 1 mM and 2-mercaptoethanol to a final concentration of 1 mM. The stock solution of PMSF is .10 M PMSF in absolute ethanol. The 2-mercaptoethanol is also in the hood, it is 14.3 M.

We're trying to find the volume of .10 M PMSF needed and the volume of 2-mercaptoethanol needed

Homework Equations



M1V1=M2V2?

The Attempt at a Solution



Not sure how we can use the equation if we have 2 concentrations
 
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  • #2
Two ways of approaching the problem.

1. Calculate both volumes to be added assuming volume of the "main" solution doesn't change. Especially if you start with 2-mercaptoethanol that will be very close to correct.

2. Add first solution (say - PMSF) and calculate how much 2-mercaptoethanol to add assuming your volume is now sum of volumes of the "main" solution and PMSF solution.
 
  • #3
You will do a 100X dilution of the PMSF, so the change of volume due that too is insignificant.

You may need to or find it practically convenient to dilute the mercaptoethanol in two stages.

More refined calculations are IMO pointless here - I suspect for what you are going to do even a 100% error would probably make no difference and you will have a teacher/lab supervisor chomping for you to get on with it! :biggrin:
 
Last edited:

1. What is PMSF and 2-mercaptoethanol?

PMSF (phenylmethylsulfonyl fluoride) and 2-mercaptoethanol are both chemical reagents commonly used in biochemistry and molecular biology experiments. PMSF is a serine protease inhibitor, while 2-mercaptoethanol is a reducing agent that breaks disulfide bonds.

2. Why do I need to include PMSF and 2-mercaptoethanol in my extraction buffer?

These reagents are added to the extraction buffer to prevent protein degradation and maintain the integrity of the protein of interest. PMSF inhibits proteases that can break down proteins, while 2-mercaptoethanol helps to reduce disulfide bonds that can denature proteins.

3. What is the recommended concentration of PMSF and 2-mercaptoethanol in the extraction buffer?

The recommended concentration of PMSF is typically between 0.1-1 mM, while the recommended concentration of 2-mercaptoethanol is between 5-10 mM. However, the exact concentrations may vary depending on the specific experiment and the type of protein being extracted.

4. How should I handle and store PMSF and 2-mercaptoethanol?

PMSF and 2-mercaptoethanol are both hazardous chemicals and should be handled with proper safety precautions, such as wearing gloves and eye protection. They should also be stored in a cool, dry place and kept away from sources of heat or flame.

5. Can I substitute PMSF and 2-mercaptoethanol with other reagents?

While PMSF and 2-mercaptoethanol are commonly used in extraction buffers, there are other alternatives that can be used, such as other serine protease inhibitors and reducing agents. However, it is important to carefully consider the specific needs of your experiment and the potential effects of substituting these reagents.

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