Tunnelling is a poor description of the phenomenon; it does not actually go through the barrier, nor does it acquire enough energy to go over it.
Simply put, we do not question how it will come to be on the other side; we simply acknowledge that it did.
Q: But how?
A: By behaving according to the rules of QM.
When we look at a wave function of a particle (which will describe where we find it when we go looking for it), we see that part of the wave function continues outside the barrier. Thus, in a small fraction of times when we look for the particle, we will simply find it outside the barrier.
A key concept here, is that we cannot be "continually" looking at the particle. Measurement is an effectively instantaneous event. Best we can do is record where it is when we do look.