Canonical transformations serve to link different physical systems by transforming their coordinates while preserving the underlying symplectic structure of phase space. They allow for the description of complex systems, such as damped harmonic oscillators, in simpler terms, facilitating problem-solving in classical mechanics. While they maintain the same physical system under new coordinates, the derivation using Hamilton's principle does not inherently require the systems to be identical, raising questions about their applicability to different systems. The preservation of structure through canonical transformations is akin to the role of linear transformations in vector spaces and other transformations in various fields of mathematics and physics. Ultimately, these transformations are essential for understanding the relationships between different physical systems and their respective dynamics.