I very much doubt there is any fundamental problem with the usual formalism of treating current density and charge density as a four vector. Everything transforms as a tensor.
What's probably true is that treating current and charge (rather than current density and charge density) as a four vector is allowed if - and only if - a system is isolated.
This is rather similar to the way momentum and energy work.
It's fairly well known that the energy-momentum of an object with a volume greater than zero is not in general covariant, this is mentioned for instance in
http://arxiv.org/abs/physics/0505004.
However, an isolated object does have an covariant energy-momentum 4-vector, as mentioned in basic SR books, for instance Taylor & Wheeler. The confusion sneaks in if one forgets the conditions mentioned in said basic textbooks that the object be isolated.
The situation with charge is similar, IMO.