my renormalization follows the so-called "Minimal Subtraction Scheme" (MS) where you only cancel the divergent part. It is typically the case that there is an ambiguity in the definition of divergent sums (and integrals), and this ambiguity must be specified by a scheme. I've seen this sum regulated several different ways (the one I've shown you being the simplest in my opinion) and it's always given the result of -1/12, so I'm not sure where scheme-dependence comes in - it might not in this case, but I can't prove it.
However, even if it does come in, I don't care: the point is that the sum is divergent, and therefore, formally undefined! I can call it whatever I want! However, choosing this scheme makes the most amount of sense in the context of physical calculations. That is: if I choose a different scheme, I might have to find myself altering other terms in my expression, and then the FINAL result will be well-defined and scheme independent. But the sum, by itself, certainly won't be - after all, the thing's INFINITY!
Before you (or others) dismiss this, consider the often-used counterexample:
I=\int_{-\infty}^\infty x dx
This integral is not well-defined. But I can MAKE it well-defined by specifying a R-scheme. The most common (and most sensible) is the "Cauchy Principle Value":
I\rightarrow P\int_{-\infty}^\infty x dx\equiv \lim_{R\to\infty}\int_{-R}^R x dx = 0
This is certainly acceptable, but by no means unique! For example, why not regulate with:
\lim_{R\to\infty}\int_{-R-a/R}^{R+b/R} x dx = (b-a)
for ANY value of a and b - that is, I can make this integral ANYTHING I WANT!
So how do I CHOSE the value of the integral? That's where math ends and physics begins. There is usually a good choice, and this choice is not arbitrary, but set by boundary or initial conditions (for example: you find Cauchy's principle value appears as a unique regulator when solving Maxwell's equations (the so-called "Kramers-Kronig relations") in order to maintain causality). I like to think of the regulator that way: just like differential equations have an infinite number of solutions, you can pick the RIGHT one by fitting boundary/initial conditions. Same here.
So to answer your question: the sum is meaningless! But there is a "right" value to assign to it that comes not from the pure math, but from the physics. And the MS regulator (or zeta fcn analytic continuation argument) picks out that correct value.
Hope that helps!