pmb_phy said:
I'm merely going by the literature that I've read in th4e past. It is the notation of tensor analysis and relativity uses tensor analysis and sometimes some author will use "|" rather than ";". If you have a text which uses the vertical bar elsewise then please post the name of the text.
Pete
I'll post lots:

awking & Ellis,
:D'Eath's "Supersymmetric Quantum Cosmology",
:Wald - both "General Relativity" and "Quantum field theory in curved spacetimes and black hole thermodynamics",
:Misner, Thorne, & Wheeler (beginning in chapter 21 - Variational methods, and continuing throughout the rest of the book),
:Almost all of the
Cambridge Monographs on Mathematical Physics books directly related to relativity.
That's pretty much all of the standard GR textbooks, and each of them uses the bar notation in the way I've described. To that list you can add pretty much every paper that's been published over the past forty years which deals with the ADM formulation, canonical GR more generally, analysis of the constraint equations, conformal decomposition of the constraints, studies of the Lichnerowicz and Lichnerowicz-York methods, several of Witten's papers on positive energy, the positive energy papers from Schoen & Yau (although they did also use D-notation), and lots more.
I'm not denying that you may have seen the notation used in the way you say. I'm just saying that that way is *not* the standard.
EDIT: Just to clarify, what I'm saying is as follows. There are standard notations for a covariant derivative. Undoubtedly, the most common is \nabla - everyone is familiar with that. However, sometimes you will also see a ';' placed next to an index to signify covariant differentiation. The point about the comma notation is that in the context of relativity it is always used to denote covariant differentiation with respect to a connection on a
spacetime manifold.
The reason why the bar notation is used to signify covariant differentiation is quite different. Often, people are interested in imbedded submanifolds in a spacetime, M. Typically, you'll take a spacetime and imbed a spatial hypersurface \Sigma in it by means of some imbedding \phi:\Sigma\to\phi(\Sigma)\subset M. This spatial hypersurface inherits an induced metric \phi^{*}g, where g is a metric on M. You can then define a covariant derivative on the hypersurface in a straightforward way - it's the covariant derivative on the hypersurface (i.e., with respect to \phi^{*}g) for which the bar notation is used, not the spacetime covariant derivative.