Tools to transform primitive cell orientation

In summary, the conversation is about a user looking for tools to rotate a primitive cell to a specific orientation and output the new coordinates. The first response suggests using linear algebra, which the user already knows but is looking for more efficient tools. Another suggestion is the software VESTA, but the user encountered issues with it. They also ask for help with the Structure Utilities in the program bilbao.
  • #1
bsmile
48
2
In case the orientation of a primitive cell is not what I want, is there tools to do a user-supplied 3D rotation to bring the primitive cell to the preferential orientation and output the new coordinates? Thanks,
 
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  • #2
Yes, it is called linear algebra :-)
 
  • #3
Dude, thanks for your response anyway. Everybody learned linear algebra and I know it pretty well. For these well-developed topics and industry-like ab initio calculation, there should be ready tools existing to free individuals from detailed manipulation of matrices and close attention to avoid errors.

DrDu said:
Yes, it is called linear algebra :-)
 
  • #4
Maybe VESTA can do this.
 
  • #5
I tried VESTA, and dragged the primitive cell to different orientations, and then output the structure to files, but found no change in the atomic positions. Maybe I did something wrong, if anybody knows how to do so with VESTA and let me know where I did anything wrong, I would be really appreciated!
 

1. What are "tools" in the context of transforming primitive cell orientation?

"Tools" refer to any methods, techniques, or devices that can be used to manipulate or change the orientation of primitive cells. This can include physical tools, such as microscopes and forceps, as well as chemical tools, such as growth factors and signaling molecules.

2. Why is it important to transform primitive cell orientation?

Transforming primitive cell orientation is important because it can play a crucial role in tissue development, regeneration, and function. By controlling the orientation of cells, researchers can create functional tissues with specific properties, such as improved strength and conductivity.

3. What types of cells can be transformed using these tools?

These tools can be used to transform a wide range of primitive cells, including stem cells, embryonic cells, and tissue-specific progenitor cells. Each type of cell may require different tools and techniques depending on their unique properties and behaviors.

4. How can researchers determine the most effective tools for transforming primitive cell orientation?

Determining the most effective tools for transforming primitive cell orientation often involves a combination of trial and error, as well as a thorough understanding of the cells being studied. Researchers may also consult previous studies and literature to identify successful techniques.

5. Are there any ethical considerations when using tools to transform primitive cell orientation?

As with any scientific research, there are ethical considerations that must be taken into account when using tools to transform primitive cell orientation. These may include obtaining informed consent from participants, adhering to ethical guidelines, and considering potential implications and consequences of the research.

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