Surely just a convention, isn't it? If the the tradition had been to draw graphs with the independent variable on the vertical axis, I bet we'd be able to come up with just as many reasons why that was the most natural and intuitive way. Then run-over-rise would be the one that'd conveniently "always work" in calculus, because a function--by the definition of a function--would never have a horizontal slope. In that bizarro universe, Joe Hx would be telling us how much prettier x = my + b is than y = mx + b, and ideasrule might be saying how much more intuitive it was to represent greater speed, acceleration, etc. with a more forward slanting slope than a sluggish, bunched up one that hardly got off the starting blocks of the vertical axis. Actually the books on relativity that I've seen mostly do follow that convention, putting time on the vertical axis and using the horizontal axis to represent some dimension of space, labelled x.