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Matlab help - alignment

by Snk_majin
Tags: alignment, matlab
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Oct22-04, 03:47 PM
P: 2
Hi all

I'm new to matlab and am having trouble with a certain function, called score. I've looked at this for a while now and can't see where im going wrong?!

The fucntion scores the similarities of two matrices,
1 for a match
-1 for a non match

the code:

function s = Score(x,y,d)

% Score matirx for x and y in {1,2,3,4}
% Mismatch penalty = d

s = ((x==1)'*(y==1)+(x==2)'*(y==2)+(x==3)'*(y==3)...
+(x==4)'*(y==4))*(1+d) - d;


x = ceil(4*rand(1,5))
y = ceil(4*rand(1,7))
[0 y; x' Score(x,y,1)]

..and that error...

??? Error using ==> _times_transpose
Function '*' is not defined for values of class 'logical'.

Error in ==> C:\MATLAB6p5p1\work\Score.m
On line 6 ==> s = ((x==1)'*(y==1)+(x==2)'*(y==2)+(x==3)'*(y==3)...

.. i;m not sure what it is?! i'm sure its something dumb.

Can you suggest a learning resource, my curernt approach is to go through online tutorials.

Thanks for your time

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