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I have already taken calculus III but must admit I didn't understand the last chapter too much (flux, Greene's theorem, etc). Are things like those used a lot in physics II?

Basically, I am looking for some advice on the differences between the calculus and algebra based classes for someone who is not the best at physics. If it is strictly the difference in math, I believe I would have no problem with things like integrals and derivatives. Any help would be appreciated.