What you are missing, SystemTheory, is the relation between force and mass depletion. The ratio of force to the mass or weight depletion rate is called "specific impulse". Here "specific" means "divided my mass" (or by weight, if you want to stick with doofy English units).
In metric units, specific impulse is force divided by the mass depletion rate. As force has units of mass*length/time
2 and mass depletion rate has units of mass/time, the units of this ratio is that of velocity. In English units, specific impulse is force divided by weight depletion rate, where weight is defined as mass * g
0 (g
0 = 9.80665 m/s
2). To people [strike]stuck in the stone age[/strike] who use English units, specific impulse has units of seconds. Whether you use metric units and express specific impulse as velocity or use English units and express specific impulse as a time, it doesn't really matter. The conversion from one to another is pretty simple; multiply or divide by g
0.
The reason specific impulse is useful is because the primary determinants in specific impulse are the chemicals used in the rocket and the thruster geometry. Other key factors are altitude (rockets are at their most efficient in a vacuum) and build-up/trail-off. A model rocket cannot be turned on and off and on and off, so build-up/trail-off is a non-issue for model rockets. Model rockets don't go all that high, so back pressure is not a big concern here either.
By the above reasoning, a good first-order approximation is to assume specific impulse is a constant throughout. Those model rocket pages often list total impulse in Newton-seconds and total mass consumed. Dividing total impulse by total mass consumed yields the average specific impulse for that rocket. Now suppose you have a time-dependent force model T(t). The mass consumption rate is simply T(t)/Isp. With that and a thrust profile you can deduce the rocket's trajectory.
Have you taken a look at NASA Glenn's rocket pages? The index to these pages:
http://www.grc.nasa.gov/WWW/K-12/rocket/shortr.html. There is a wealth of material in these pages. The mathematical background is intro level calculus or less. It is quite accessible to a bright high school student.