Zee99 said:
in order to use the length contraction equation, one must assume that the Earth has been accelerated to high speed
Nonsense. I don't know why you would believe that. If an object is inertial (has not accelerated) in one frame then it is inertial (has not accelerated) in all frames. All frames will agree on the proper acceleration. Ignoring the orbital acceleration around the sun, which is negligible over the life of a muon, the Earth is not accelerated in any inertial reference frame.
Take an arbitrary inertial object in an arbitrary inertial frame and it will have a worldline like ##(t,x)=(t,vt+d)## which clearly has no acceleration. Now, transform that worldline to another frame and after some simplification you get ##(t',x')=(t',v't'+d')## which also clearly has no acceleration.
Zee99 said:
, and, if we consider all the mesons penetrating the atmosphere, we must assume that the Earth is being accelerated at high speed in all those directions simultaneously. Now that sounds a bit illogical to me, and I must reject length contraction explaining how the muons reach Earth's surface.
It is indeed illogical, however your strange misunderstanding about the basic mathematics of inertial frames in no way constitutes a valid rebuttal of length contraction.
Zee99 said:
(2) Particle beams. Are you referring to the experiment where one beam broadsides a low energy beam of ions, then the ion energy is increased, and it is broadsided again?
No, I specifically mean the length of a bunch in a particle accelerator. They must be designed with length contraction in mind. If you did not consider length contraction then you would get less charge in a bunch than is actually the case. The fact that we get the designed amount of charge in a bunch confirms that length contraction has occured.
Zee99 said:
(3) MMX. I've been through their equations, and it was there that I noted how they assumed the presence of an ether. I understand that AE showed it didn't matter, but it did matter in explaining the null result.
No, it didn't. All that mattered is that there exist some frame in which Maxwell's equations hold and that the apparatus length contracted in that frame. In any frame in which Maxwell's equations hold, there is no other explanation for the null result of the MMX other than length contraction.
As I said above, there is no rational objection to length contraction, given the evidence. You can choose to be irrational, if you wish, or you can choose to ignore the evidence, but such choices do not change the facts. Again, I would point out that Michelson Morely, Ives Stilwell, and Kennedy Thorndike together confirm experimentally the Lorentz transform without assuming the postulates of relativity, which means that Maxwells equations hold in all inertial frames. Given that, the experimental consequences of length contraction are an unavoidable logical result.