Angstrom's Muse said:
Ok. Thank you all for the help. Specifically (Marvin the Martian 10,007) Some of these concepts I understand after gathering information and others I am still processing. I have an idea that is tough to articulate and gaining the vocabulary is proving to be the big challenge. Having said that, I find a smaller problem with the inauthentic ways of explaining these concepts. Most of the informative videos and visual diagrams that are widely used to explain these concepts are (what I feel) misrepresenting the concepts completely and creating more misconceptions in my head. An example of this, is the picture of the Earth sitting in a x y grid
en.wikipedia.org as a relevant image to explain space-time. What the heck?! I find my own understanding is clouded with these images. Is this a fair assumption?
I would agree with your observation that pop-science, though well intentioned, can be misleading or even very misleading. I would go so far as to say that it's not infrequent for pop-science to interfere with a true understanding of the real underlying issues :(.
Now,
Back to biology and physics connection. Before I spoke of time being defined as the rate at which molecules decay (ie. humans aging), this seems to be an unorganized way of looking at time and I understand that there are some misconceptions I have there. However, I am not sure if the "speed of clocks" definition is same as what I mean by "the pace of time."... again vocabulary is the missing link here. I will attempt to present a series assumptions that may frame my question better.
Time is measured in seconds, and it might be helpful to look at the SI definition of the second to get a better appreciation of time. See for instance
http://physics.nist.gov/cuu/Units/current.html
The second is the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the cesium 133 atom.
Cesium atoms don't actually "vibrate" like tuning forks, but the pop-sci analogy is too seductive here for me to resist, in spite of the fact that it's probably ultimately misleading. The misleading parts of the analogy probably won't be a problem unless/until you get into quantum mechanics, though. So, for the purposes of special relativity it's probably not a truly awful anology.
A more abstract idea is that the concept of time is based on periodic changes of state, and we can count the periods, which gives us a notion of "time", much as we could count the physical vibrations of a tuning fork. Atoms are ideal for this purpose, they're all the same, and we can observe their periodic changes of state and use them to create very accurate clocks. Probably there's a lot of room for argument over some of the finer details, but for a rough overview I hope this is simple enough to understand and yet accurate enough to be useful in understanding the SI definition of the second.
So time applies even to atoms. It's more fundamental than atoms, really, but it's convenient for experimental purposes to use atoms to measure time for the reasons already discussed. This property of atoms caries over to molecules, which carries over to chemistry, which carries over to biology, which eventually caries over to your personal perception of "time". But your personal perception of time is more complex than the physical quantities which we measure, and the relationship between your personal perceptions and physics is ultimately a question of philosphy. I won't get into more detail about that,among other reasons of personal preference, philosophical discussions on PF are discouraged as a matter of policy.
The idea of the "rate of time" isn't ultimately physics, or biology, it's a bit more subtle. It is ultimately based on the idea of coordinates. Coordinates are a tool pf physics, but are not in and of themselves physics, there are just one of the tools physicists use. There are some approaches to physics that don't use this tool, i.e. coordinate independent physics.
Abstractly, coordinates are just labels that we assign to events. Time coordinates are labels, usually numbers, that we apply to events to tell "when" they happened. The idea of "when" is subtly different than the idea of clocks. Clocks tell us proper time, the amount of elapsed time between two events, a starting event and an ending event. But they do not have enough structure yet to tell us "when" an event occurs. To do that , you need to introduce an additional layer of abstraction, a coordinate system, that assigns the "when" labels to various events that occur in space-time. Typically, one might start out with some "master clock", co-located with an observer, define some "reference event" that occurs at time 0 on the master clock, then use the concepts of simultaneity to assign a time coordinate to every event.
The fundamental issue is that while we are used to the idea that we can assign coordinates in such a way that the difference in time coordinates between two events is equal to the amount of time a clock, present at both events, would measure, it turns out to be impossible. The reason for this is ultimately very simple, but confusing.
Because time and space turn out to be interdependent, different clocks can be present at the same starting, and ending, events, but measure (or experience) different amounts of proper time.
Therefore, the notion of coordinate time can't be the same as the notion of proper time, that clocks measure. The ratio of the proper time of a particular clock to the difference in the coordinate times turns out to be what we call "time dilation". It also turns out that time dilation depends on the velocity of the clock (as expressed in the coordinate system), and not other factors.
There's another important observation here. I earlier mentioned "observers" and "simultaneity" when I talked about setting up coordinates. Hopefully these are familiar concepts (though it turns out they're trickier than they look - but the tricky parts aren't a problem until one wants to move on to general relativity from special relativity). Anyway, the important observation is that simultaneity
depends on the observer in special relativity. There is no "universal" notion of "simultaneity". This is one of the most frequent obstacles to understanding special relativity, in traditional Newtonian physics it is assumed that simultaneity is the same for everyone, and it is very hard to break this habbit of thought once it has been established.