Organizing and Databasing Papers/Science Articles

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Building a large collection of research papers can be overwhelming, especially when it comes to organizing citation information. A text file method for tracking citations may become cumbersome. Database programs like Microsoft Access can help, but free alternatives are sought after. Zotero is highlighted as a robust solution for managing references, allowing users to organize papers, PDFs, and links into searchable collections and tags. It integrates with word processors like MS Word and OpenOffice.org to automate bibliography creation and facilitates searching for resources in university libraries. Zotero works best with Firefox, although it now offers Chrome integration as well.
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I'm beginning to build a large collection of papers for my research and it is getting bewildering trying to navigate them and collect their citation information. Right now I keep making a text file in each directory with the citation information of each paper and their file name. Is their a database program that can run on a flash drive or a computer to organize my papers and that I can search through? Does bibtex do something similar?
 
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Thanks Greg, but does anyone know of any free alternatives?
 
http://www.zotero.org/"

Edited to add: Allows you to manage all your references, including pdfs of the papers, links to webpages, fully searchable, and organized by "collections" and tags. Integrates with MS Word and OpenOffice.org to automate production of bibliographies. Also automates searching for books/papers in your university library, and automates logging into journal websites through your library proxy. Works best with Firefox, but I think they have chrome integration now.
 
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