I think I understand now. Say I have a transistor in CE configuration with an emitter resistor, biased for some current. I have the base biased to say 1.6 volts at ambient temperature, so the transistor is in its active region, so the voltage across that emitter resistor 1.6-0.6 = 1 volt. Now, if the temperature increases, the voltage drop across the base to emitter junction might decrease to 0.5 volts, in which case I have 1.6-0.5 = 1.1 volts across the emitter resistor, which tends to increase the emitter and hence the collector current. This could lead to thermal runaway if there were no resistor to apply negative feedback where the increased current generates heat, which causes the Vbe drop to decrease more, generating more heat, etc. Does that sound about right? I think I was confused because I was mistaking the intrinsic base to emitter drop, which changes with temperature, to the applied voltage base to emitter, which determines the emitter current through the Ebers-Moll model.