PeterDonis
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Robert Shaw said:A simple example is a precessing qubit state. It isn't in a single energy state which is why it precesses.
It precesses because it's in an external field. In other words, the full state is not just the state of the qubit, but the state of the qubit and the state of the field. And the full Hamiltonian is not just the Hamiltonian of the qubit, but the Hamiltonian of the qubit plus the Hamiltonian of the field plus the interaction between them. The qubit's state is not an eigenstate of the qubit-only Hamiltonian, but the full state of the system (qubit and field) is an eigenstate of the full Hamiltonian. And it's the latter that is analogous to the state of the universe as a whole, since the universe as a whole has nothing else outside it to interact with.
Robert Shaw said:The the two qubit case is interesting because solutions can be found where the energy oscillates between the two internal components with no energy flowing elsewhere.
Do you have a reference?
Robert Shaw said:An isolated harmonic oscillator has solutions that superpositions of energy levels (most textbooks cover this case).
A harmonic oscillator does. An isolated harmonic oscillator doesn't, at least not in any meaningful sense; you can mathematically write down a superposition of its energy eigenstates, but energy will not be conserved in such a system, so it's not physically possible.
Robert Shaw said:An isolated atom can be in a superposition of energy states. It just sits in this superposed state, neither gaining nor losing energy.
No, it doesn't. A superposition of energy eigenstates will change with time, and so will the probabilities of measuring it to be in different energy eigenstates if its energy is measured. Also see above.
Robert Shaw said:For an isolated atom with spin-orbit coupling there are precessing solutions that are not energy eigenstates (this case can be found in many textbooks).
They are not eigenstates of the Hamiltonian for just the electron. They are eigenstates of the full Hamiltonian of the entire atom, including the interaction between the electron and the nucleus. See above. (Technically, the full Hamiltonian would include the electromagnetic field, since that's what actually mediates the interaction between the electron and the nucleus; but for most purposes the approximation in which the Coulomb potential of the nucleus stands in for the EM field works fine.)
Robert Shaw said:More complex versions crop up in quantum optics in connection with Glauber states and they certainly can be closed states.
I'm not sure what you mean. A quantum optics system is never "closed" in the sense of being isolated; there are all kinds of devices in the system (beam splitters, etc.) whose states are not captured in the quantum state of the qubits.