I'll attempt a reply to some of your points, though I'm still not clear what you have in mind.
As far as the first paragraph is concerned, you need a choice axiom or something similar to prove results in a formal system, otherwise you simply get stuck proving lots of standard mathematical results. The statement of the axiom would, with the usual interpretation, assert the existence of a set or function. The set or function could be thought of as a choice from an arbitrary collection of nonempty sets, but has not much to do with consciousness.
If you're not proving results in a formal system then you can follow practice prior to about 1900 (and probably mostly since) by taking AC as read, without losing too much - as you apparently do.
Incidentally you say in the first paragraph, "I understand you can index the elements of a set of [sic] with a bijective mapping from the set of natural numbers". This may be meant just as an example, but it's very relevant that you can't index the elements of the set of Dedekind cuts in \mathbb{Q} with a bijective mapping from the set of natural numbers.
Regarding the second paragraph, you say that the reals are well ordered. I trust that you are aware that, as pointed out by CRGreathouse previously, with their usual ordering they are most definitely not (as neither are the rationals). It is more accurate to say that the reals may or may not be well ordered depending on how (and, of course, if) they are ordered.
I really don't understand how analytic continuation is relevant here, so I've assumed you intended the content of the following sentence to clarify this. Unfortunately I also have problems with this sentence.
(1) In the phrase, "finite string of well ordered reals", the term "well ordered" appears to apply to the reals rather than the finite string. Was this intentional? I can't assign any very plausible meaning to an individual well ordered real number, but then a finite string would be necessarily well ordered, so the phrase would be redundant if it applied to the finite string. But what string do you have in mind here anyway?
(2) The "finite disjoint well ordered subsets" referred to are presumably meant to be subsets of \mathbb{Q}? If so there are strictly fewer finite subsets of \mathbb{Q} than reals, so how could the reals be regarded as a collection taken from these?
(3) How is the transition from "a finite string of well ordered reals" to all reals meant to work?