Chromosome & DNA: Unpaired Y-Chromosome and Palindromic Algorithms

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The discussion revolves around the evolutionary risks associated with the Y-chromosome in men, particularly its potential gene loss due to being unpaired, unlike the paired X-chromosomes that can correct errors. MIT researchers suggest that the Y-chromosome has adapted by encoding major genes as palindromes, which may help preserve genetic information. The user seeks clarification on several points, including how X-chromosomes pair, the specific dangers posed by the Y-chromosome despite its double-stranded structure, and the mechanics of how palindromic sequences function in DNA. Understanding these concepts is crucial for grasping the implications of Y-chromosome evolution and genetic stability. Further reading on DNA structure and chromosomal behavior is recommended for deeper insights.
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I've stumbled upon an interesting short article http://www.npr.org/templates/story/story.php?storyId=4225769

It's about the possible danger of Y-chromosome in men loosing its genes throughout the evolution, because it is unpaired (the X-chromosomes are always paired and thus can correct random errors). That could inflict danger on reproduction, however MIT researchers claim that the Y-chromosomes have found an other way to survive by encoding the major genes as palindromes in DNA...

Now, what I can't understand is the following:

what I assume (please correct, if wrong):
1. DNA is a long double-stranded (ds) molecule. It splits into two single-stranded (ss) counterparts only during replication. This is the place where the mutations can take place, however there always remains the second single-stranded counterpart, which will probably remain unchanged.
2. chromosomes are nothing else than a complete (3 billion base pairs), double-stranded DNA molecules.

what I do not understand:
1. How to X-chromosomes couple? Can two double-stranded DNA's couple?
2. What is the danger with Y-chromosome? It is dsDNA, and is "secured" by the fact that mutation will occur only in a single strand, while the other one will survive. Why is the palindromic algorithm needed?
3. How does DNA implement palindromic algorithm? Does it simple bend and copy itself like that:
"__" turns into "U"

Thanks!
 
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