Some more thoughts. Maybe the "extra" energy flux term ##\overline{\mu}\vec{J_e}## (note that there's a slight units mistake, the charge of the electrons should hang around, but this doesn't change the discussion) accounts for an energy the power source needs to "use" initially, but needs not to maintain, in the steady state for example.
The thing is, an ideal wire (zero resistivity/resistance) with a current has more energy than the same wire with zero current. This also means that when the current goes away, this energy has to go somewhere (it cannot go away by Joule heat if the resistivity is null), maybe it is radiated away, I do not know. But I do know there is an energy due to the current (comes from integrating ##\overline{\mu}\vec{J_e}## over the volume of the wire).
What I could do soon, is to make a sketch and draw ##\vec{J_U}##, ##\kappa \nabla T## (or the Poynting vector if you prefer), and ##\mu \vec J_e##, to get the full mental picture of how the energy is flowing inside the wire. When the resistivity is non zero, ##\mu## grows/decrease (I'd have to check the signs) when going along the direction of the current density ##\vec J_e## is constant throughout the volume, so this means that this energy term the youtubers have missed either grows or decrease along the wire, i.e. it's not constant. It is constant radially, for a given position along the wire. The Poynting vector follows what the termal gradient does, i.e. vanishes at the center of the wire and increases as we move away from the center radially. It does not depend on the position along the wire, only depends on the radial coordinate. The total energy flux (which correspond to the internal energy flux) is the sum of these 2 energy fluxes.
In the case of zero resistivity, the first energy flux doesn't increase/decrease anymore along the wire (##\mu## is constant), and it is non zero.
Therefore, in every single possible cases imaginable, there is an energy flux that goes along the wire, and energy "flows" inside the wire, no matter what happens to the Poynting vector (could vanish, or not, doesn't matter).