Thx for the reply Tiny-tim, but I don't think the way you're looking at it fits the problem I described because in your explanation the ellipse's minor axis can never be larger than the diameter of the cylinder, no matter how many arbitrary rotations you give the plane. In the problem I was pondering, starting with an ellipse which given will fit a sliced cylinder at some angle, once you do a transformation of that ellipse within its plane but at angle different from its major axis, the new transformed minor axis is definitely longer than the diameter of the cylinder being used to help visual things. So I do not think cross sections of the circular cylinder provide a useful analog after you start stretching things on axis other than the major axis. You could perhaps start manipulating the 2nd ellipse to get it to fit back on the cylinder but that would require the info we are trying to get at in the first place.
I guess my problem is if you have a vertical cylinder/rod with a horizontal elliptical cross-section (not a circle), then I slice a new ellipse using a plane through the rod at some arbitrary angle and orientation, how do I find the major axis of ellipses that results. I was hoping there was some equation were I just plug in the relevant data and it spits out the new angle. Thx again