pivoxa15 said:
Is all chemistry ultimately about electrons in atoms and their configurations?
I hope you are using the term 'configuration' in its standard meaning (i.e., the list of occupation numbers of the different partially or fully occupied orbitals). Most parts of Chemistry do, in fact, boil down to electron configurations, but
(i) that is not the way that most of these parts of chemistry are dealt with (for just the same reason that most sociology boils down to chemical reactions in a human being yet no one can hope to understand why for instance, the Shia and the Sunni hate each other, by balancing equations), and
(ii) there are some areas in chemistry (e.g., NMR chemistry) that do not even boil down to this.
If there is an electron reconfiguration then chemistry is involved a new chemical entity comes into existence.
Chemistry is a tool to study and model phenomena. Chemistry is not a phenomenon or fundamental principle of any kind. Chemistry, as a science, is a completely different thing than the term used colloquially in phrases like "there's no chemistry between us." What do you mean by saying chemistry is involved in an electron reconfiguration? And what is a "reconfiguration"?
So take 2,4-dimethylpentane.
Okay
It has two types which cannot be superimposed onto each other.
"Types"? What are 'types'? If you do not use standard terminology, it's hard to have a coherent discussion. Do you mean isomers?
2,4-dimethylpentane has no isomers. All bonds are single-bonds and permit free rotation. There are no cis- trans- isomers for this compound.
One where both methyle groups are in the same direction. The other one where one methyl group is on top the other down the bottom.
What do you mean by "top" and "bottom", when no three co-terminal bonds are coplanar? In fact, there are an infinite number of rotations where, viewed from some external point, you will see the two methyl groups take the highest and lowest points in the molecule.
But I believe there is one orientation each which makes those two C-CH3 bonds parallel or antiparallel (perhaps that's what you mean). These two rotational orientations, in general, need not put the two methyl groups closest or farthest apart from each other.
However, one can be made into the other without an electron reconfiguration so these two molecules are not isomers of each other even though they are not superimposible?
They are not considered isomers for the reason that free rotation allows any given molecule to sample "both" orientations. Furthermore, isomers are never superimposable. If two spatial configurations are superimposable over each other, they are the same molecule. How would you distinguish one from the other?