My point is that this 4-6 inch length of wire has such small resistance and inductance that the probes ARE effectively connected to the same point. That was the intent of my inserting the work "effectively". As you know, we often take different positions along a wire to imply the same nodal point. You are correct to point out that this can sometimes lead to erroneous measurements. I'm sure that if you do a careful enough measurement you could identify the effects of both resistance and inductance of the wire. But, in physics and engineering we try to develop the art of estimating orders of magnitude and understanding what effects are significant and which are not. The Prof. has set up an experiment that creates such a large disparity (0.1 V versus 0.9 V) that the gross behavior he wants to identify won't be masked out by these smaller effects.
Inductance is very small, but the transformer effect is big. You ever seen transformer that have two output taps only half turn apart on the winding? I did, I worked in a company called Aydin Energy Div. in 1979 that wind huge custom transformers for enectrical companies, the winder was joking and told what is this about two taps within half a turn and showed me.
4 to 6" of line is not short, if it is on a mini transformer, 6" is 5 to 6 turns on the winding, that is a lot of volts! You look at the turn, not the length.
I didn't mean to create confusion. My main motive in mentioning the moving of the meter (how's that for an unintended alliteration!

) is to stress the point that the connection point of the meter at the nodes is not critical in this experiment. What matters is the location of the meter and the routing of the leads.
I think his point is that the voltage across each resistor is not well defined without a simultaneous definition of path for the measurement. It's clear that current times resistance (potential) is different on both resistors. However, if you try to measure that potential, you will get different readings of voltage depending on the path. The measurement that actually correctly indicates the potential is the one where the leads and meter do not encircle the flux change. Imagine if you were doing an experiment and did not know the flux change was there. You would start pulling your hair out because the voltage reading would change drastically when you move the leads. Of course, this can happen (and often does happen) in real modern circuit measurements, particularly when designing and testing switching power supplies.
I'm not sure I'm understanding you here, but it seems to me that you are not grasping the concept of nonconservative fields, and the fact that both resistors can tie to the same nodes with different potentials. This seems counter-intuitive because we are trained to expect the potential across two nodes to be the same, but in this case they are not the same. The model of a 0 ohm connection, even if unrealistic, is perfectly acceptable as an approximation in this case. It helps reveal the physics, just as we often ignore friction to help teach physics principles in mechanics problems.
Anyone can break down anyone else's model because no model is perfect. The only question is whether his model is good enough. I believe that it is because when I check his detailed analysis and explanation it agrees with his scope readings. I'm also giving him and his helpers the benefit of any doubt and assuming they are smart enough to check out all these things you are worried about. This is all stuff that is well known by people with experience. I don't see any red flags or smoking guns and the end result makes sense once you think about it.
The energy conversion is through induction, as described by Faraday's Law. Whether you think of this as an inductor, a transformer or a generator is not the main issue. But, this inductance effect (if you like to call it that) is unrelated to the parasitic inductance of the wire itself. The small inductance and resistance of the wire just don't enter into the physics in a significant way, in this experiment and analysis. For this reason you can swap the locations where the two scopes tie into the nodes. You can also move the connection points anywhere along this few inch length you are concerned about. You can also physically pick up one meter and move it to the other meter's location and then both meters would read about the same.