I think the project has been refined to the point where an absolute reference frame is no longer part of the description. The observer is now described as stationary wrt the Sun center of mass, for instance.
We also have a context:
The project is to be suitable for an advanced 9th grader (i.e. 13-14yo).
It is reasonable, at this level, to have an investigation that cannot succeed provided, in the process, learning happens.
Instead of a line on the planets of interest, I'd suggest picking a spot on the planet instead - then you can trace the trajectory of the spot wrt some observer. You'd expect a weaving trajectory ... say if you looked "down" on the ecliptic. (your choice of observation point will likely have a very oblique view of the orbits - you won't get much detail that way - but the details will get boring anyway, see below.)
You still don't seem to appreciate the relative scales - on a scale where the Sun is 1m across, drawing all the planets (That is, out to Uranus) in would need a bit of paper 6km on each side. On that scale, the Earth is about 10cm across so the wobble you get tracing a spot on it's surface would be sort-of visible. It will have an amplitude of 5mm (0.2") and repeats every 1.7m (about 60").
The smallest you can get the picture and still have the wiggles bigger than the pencil line would be about 600m on a side.
The investigation is still worthwhile - it will show you how much those wall posters of the solar system are misleading you to begin with. To avoid too much frustration, take it slow: start by working out what it would take to build a scale model of the solar system. Putting the Sun scaled to 1m diameter - beach-ball, or some common round object - is handy because the other planets come out to easy to handle sizes ... then represent the distances to the planets in terms of common spaces - like if you put the Sun at one end of a football field, where would the orbit of the Earth go? Get your son to do it.