PNA-DNA Stability: Is Hybrid More or Less Stable?

  • Thread starter Thread starter pzona
  • Start date Start date
  • Tags Tags
    Stability
AI Thread Summary
The discussion centers on the stability of a hybrid double helix formed by unzipped PNA (peptide nucleic acid) and DNA compared to a pure DNA double helix. Key points include the neutral backbone of PNA versus the negatively charged phosphate backbone of DNA, which raises questions about how these charges influence stability. The consensus suggests that the lack of charge repulsion in PNA could lead to stronger interstrand bonding, potentially making the hybrid as stable as or even more stable than pure DNA. The bonding mechanisms remain consistent between PNA and DNA, as both utilize the same Watson-Crick base pairing. Overall, while initial assumptions leaned towards DNA being more stable, further analysis indicates that the stability of the hybrid may not be significantly less than that of pure DNA.
pzona
Messages
234
Reaction score
0
If "unzipped" PNA and DNA combine to form a double helix, will the hybrid be more or less stable than a pure DNA double helix? This was a question on my chem homework (in a section on intermolecular forces), but I'm posting in this section as I already turned in the homework so I'm asking more out of curiosity than anything. The only real information I had on PNA was that its backbone is neutral, while I know that the phosphates in DNA give its backbone a negative (-2?) charge. I'm not sure how these really affect each other, as the base pairs are what connect the two together, but the charges seemed to be emphasized in the question, and this really confused me.

I'm not sure how common PNA (peptide nucleic acid) is, but I asked this question to some grad students in the bio lab where I work, and they weren't too sure as they hadn't worked much with PNA (a few didn't remember even learning about it actually). On my homework I guessed that it would be less stable, just because I know that DNA is pretty stable as it is, but I'm starting to think the stabilities would be about equal, and that the part about the charges was just thrown to distract me. Anyway, if anyone can even help me out with the thought process in this problem, I'd appreciate it.
 
Chemistry news on Phys.org
I would say that the bonding should be stronger in PNA since all things being equal, a neutral backbone would lack charge repulsion present in both DNA and RNA. The interstrand bonding is identical to that of DNA... identical purine and pyrimidine bases are present in both classes of compounds and both form the same Watson-Crick pairs .
 
I was introduced to the Octet Rule recently and make me wonder, why does 8 valence electrons or a full p orbital always make an element inert? What is so special with a full p orbital? Like take Calcium for an example, its outer orbital is filled but its only the s orbital thats filled so its still reactive not so much as the Alkaline metals but still pretty reactive. Can someone explain it to me? Thanks!!
It seems like a simple enough question: what is the solubility of epsom salt in water at 20°C? A graph or table showing how it varies with temperature would be a bonus. But upon searching the internet I have been unable to determine this with confidence. Wikipedia gives the value of 113g/100ml. But other sources disagree and I can't find a definitive source for the information. I even asked chatgpt but it couldn't be sure either. I thought, naively, that this would be easy to look up without...

Similar threads

Replies
2
Views
2K
Replies
16
Views
3K
Replies
24
Views
3K
Replies
3
Views
6K
Replies
3
Views
8K
Replies
2
Views
8K
Replies
25
Views
5K
Back
Top