You are entering into an engineering project with a bit of complexity.
The intensity will be determined by the efficiency of the electrical current producing the light from your light source. This will vary depending on the details of what you are using. With a manufactured product (such as an aquacultural UV sterilizing unit) using a designated light source, you can get the information from the manufacturer. You might be able to get this information for the LED you have from its manufacturer.
Alternatively you could measure the UV output directly which would also take into account the amount of reflected light your container could provide. Otherwise you could try to figure that out or assume it does not happen and end up with a higher UV dose, which would improve safety for human consumption.
A very important consideration in effectiveness of dose is the water clarity. For this reason, in water recirculation systems, particle filtration is always placed upstream of the UV. If your water is not clear, you should filter it first.
Also if you are putting the UV through any glass, you should use quartz glass which passes UV more effectively than other kinds of (affordable) glass. This is another factor that the engineers build into the effectiveness calculations of particular manufactured products.
An additional factor is the age of the light source. Traditional UV fluorescent tube age over a period of months and end up with a reduced UV output. For fluorescent bulbs, this information is provided by the bulb manufacturer and is taken into account by only using the bulbs for a certain time period and sizing the UV dose for the aged output of the bulb. Does this apply to LEDs? I don't know, but it would not surprise me if LED output reduces with long term use.
edit:
Here is a pdf with doses for some of the organisms you mentioned.
It is my understanding that Giardia can removed by filtration by campers (or boiling).
If I were doing this for water for human consumption, I would use a higher than 90% inactivation rate in determining my UV dose.