Right, I was basically assuming Born rigid motion (I think).
It occurred to me after I posted, that if the two clocks are not attached to a spaceship or to each other, and each has its own rocket attached to it, and the two rockets accelerate identically in the Earth frame up to their final velocity, then at the end, the two clocks are still synchronized in the Earth frame, and the distance between them is not length-contracted in the Earth frame (both unlike the case with a Born-rigid rocket). This puts us in the territory of "Bell's spaceship paradox" which has been discussed here extensively.