I am not sure what you are getting at here. I did not say that an electrical current was NOT due to a flow of electrons (I am an experimentalist, and having spent most of my career doing transport measurements is do know at least some of the fundamental stuff...), merely that when you DO use a "first principles" model for real materials one needs to keep in mind the various many-body effects etc that come into play and that can be extremely important (as in e.g a semiconductor where electrons and holes have different effective masses, even thought the latter obviously are not "real). One advantage of using concepts like quasiparticles etc is that we avoid many of these problems.
Hence, for someone trying to understand the basic physics it is probably not very useful to take a first-principles approach to current transport and think about single "real" electrons.
Also, there is another point here which is important (which is what I was trying to get across above): In many cases these "composite particles" BEHAVE as if they were real: We never see a Cooper pair behave as two individual electrons (unless we split it, but then it can't contribute to the supercurrent); in all experiments we see a charge carrier of charge 2e. The same is true for holes (just think of a Hall effect measurement of an p-doped semiconductor, the charge carrier is positive) and -more generally- higher order excitations.
Hence, while we should of course be aware that there really isn't anything in a solid except ions and electrons this does not change the fact that collective effects are in many cases just as important as the particles.