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<br />
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Ok, I've extended the diagram a little so I can talk about some additional things.
Once we permit ourselves to think about the universe in terms of a space-time, we can ask a "what if" question...
We know from geometry that all lines are the same. Sometimes we pick two perpendicular lines to be axes, but we can always rotate and pick different axes. So...
What if we allow lines that aren't horizontal to be "when" and lines that aren't vertical to be "where"?
Nonvertical lines reprsenting "where" have been around a long time; the blue line represents a "where"... the train. Other lines parallel to the blue line also represent "where"; places at a fixed position relative to the train.
The thing that makes SR different than Gallilean relativity is that SR also permits diagonal lines to represent "when". The black line I've drawn on the diagram is a line that, according to SR, represents "when" in the train's frame.
Now, before you jump on this and call it stupid, consider this: even if you think it's stupid to let a diagonal line represent "when", we can identify this black line in reality. We could define a collection of lines parallel to the black line, and define something by these lines.
So, whether or not you consider this a measurement of time, it is certainly a measurement of something physically meaningful in reality.
In this diagram, I hope you can see how SR can say that in the train's frame that the emissions aren't simultaneous. If we're using these diagonal lines to measure "time", instead of horizontal lines like we're "supposed to", then it's clear that this different way of measuring "time" will not measure the two emission events as occurring at the same time. In particular, if we're using these diagonal lines to measure time, then the emitter on the right will fire before the emitter on the left!
I extended the picture so I could also talk about the "center of emission". Again, if I'm using these diagonal lines to define "when", then the points where the right photons intersect the black line correspond to the same "time". The little dot I drew is the midpoint between these two intersections. If I'm using the black line to define "when", then that dot should be the "center of emission", because it is the point midway between the photons.
Again, this diagram shows how we can be referring to the same reality, but disagree on the "center of emission".
Each frame of animation #2 can be generated by drawing one of these diagonal lines. The black line I drew corresponds to the frame in animation #2 when the left emitter fires. Notice that, along this black line, the right photon is much closer to the yellow observer than the left photon is, the train is located at the midpoint of the photons, and the right center of emission is located a little to the right of the right source. If you look at animation #2, the frame where the left emitter fires will conform precisely to this description. (including your green fuzzy dot!)