No kinetic energy cannot be negative.
You are cheating. Once you argue with quantum mechanics, you need to check what the classical proposal that you are making means.
You still seem to assume that there are small electrons flying around in their orbitals, but they don't. The whole orbital is the electron. When you check, "where the electron is", you will get a result, which is governed by the wavefunction, it doesn't mean that the electron was there at the time of measurement, it only means, that's where it turned up. At least in the Copenhagen interpretation.
Classically there doesn't seem to be a difference between the two statements, but for a clean Copenhagen interpretation, the electron must not be assumed to exist in another form than the wavefunction, it is especially not "flying around imitating an orbital".
So now to your question:
So let's do your experiment:
- put electron in ground state
- measure position and find it far away from the atom
- measure kinetic energy
When the Electron is in the ground state it is in an Eigenstate of the Energy, so pretty much all hat we know about it, is its Energy*
We don't know its position. When me measure it's position sufficiently accurately we force it into a new eigenstate of the position operator, now its Energy is not known anymore, and it has a new probability distribution. Actually if you measure with very high accuracy the probable outcome for the kinetic energy skyrockets, because of the increasing with of the momentum.
There are a few more ways to look at the problem, some deal with the kinetic energy you induce with the measuring apparatus, but that would strengthen your ideas about a classical explanation that you need to get away from imho.
*yeah yeah and whatever is commutating with it...