This is false. Write the total Hamiltonian schematically as ##H = H_1 + H_2 + H_i##, where ##H_1## is the free particle Hamiltonian of particle 1, ##H_2## is the free particle Hamiltonian of particle 2, and ##H_i## is the interaction Hamiltonian. If the system is closed, it will be in an eigenstate of ##H## (but see below for a caveat to this), but it will not, in general, be in an eigenstate of ##H_1## or ##H_2##. That means that measurements of the energies of the individual particles can give changing values, because those are measurements of ##H_1## or ##H_2##. (Heuristically, this is because the interaction creates a potential energy between the two particles, whose value is not contained in measurements of the energies of the individual particles.) But a measurement of ##H## will always give the same value.
Of course in this simple closed system, we can imagine measuring ##H##, because we know the real universe consists of a lot more than a closed two-qubit system. But if that closed two-qubit system were the entire universe, there would be no way to measure ##H##, because that would require the system to interact with something outside it. So there would be no way to test the claim that the system as a whole was, or was not, in an eigenstate of ##H##. However, if you try, you will see that it is impossible to write down a consistent state for the closed two-qubit system that is not an eigenstate of ##H##. Heuristically, this is because the system is closed and can't interact with anything else, so there is nowhere for it to gain or lose energy to. Any real system that is not in an energy eigenstate is not closed; it is interacting with something else (for example, an electron in an atom interacts with the electromagnetic field, which is what allows it to change energy levels).