It is just notation, I am no expert on neither manifolds or index calculus, but you are interested in them I suggest learning topology! Topology deals with manifolds, like ##\delta## complexes and betti numbers (which I recently started to read up on), also I would assume doing calculus on a manifold would be like doing arithmetic geometry(or something analogous to) it is just a way of understanding the "space" a little bit better. (I guess a way Einstein might put it). Sorry for not answering your question I am sure someone will come on here with a lot better answer than mine, till then cheers mate :D