I get that the potential energy in the capacitor, the voltage across its plates, and the charge stored on its plates all start to decline after t=0, but I still don't understand what is going on here. In both cases you should be able to account for the unused portion at the end of the pulse. In the charge-current equation, perhaps by lowering the initial quantity of stored charge to account for the amount you can't use. In the energy equation, perhaps by increasing your potential energy requirement to account for all the wasted energy. With both equations it looks like you can account for the unused energy. So I still don't see why each equation gives me a different capacitor value, and exactly by a factor of two as well. In the charge-current equation capacitance is inversely proportional to the voltage across the plates. In the energy equation capacitance is inversely proportional to the square of the voltage across the plates, but it also has a much larger value in the numerator. For simplicity sake and for the purpose of comparing the two equations, it might be better to assume that I can make use of the full potential energy of the capacitor all the way down to zero volts and zero joules.
I think the reason I am getting different answers is because I am asking different questions. I need to understand how the questions are different. So I am going to try to look at each question in greater depth. One equation relates capacitance directly to stored charge and indirectly to a constant current for a given amount of time based on the idea that a given charge Q on the plates can only sustain a particular current until the charge from the plates has been used up. The other equation relates capacitance to the total potential energy stored by a capacitor and the voltage across its plates. With both equations a larger voltage allows for a smaller capacitance. In the energy equation a larger potential energy requirement results in a larger capacitance and this potential energy is derived based on the input power of the load and the length of time that power is required. In the charge-current equation a larger time with a fixed current or larger current with a fixed time requires a larger capacitance.
I was interpreting tI = CV to mean that a capacitor of of 3.5 mF would be capable of discharging 70 amps of current for 0.5 seconds from a peak plate voltage of 10 kV. But maybe it just means that that is what would happen if I could somehow keep the plate voltage at 10 kV during the entire discharge, which is almost doable with a pulse forming network at the expense of a high bandwidth square wave pulse shape. The more I think about this equation the more I think that I am somehow misusing it and it probably has something to do with the continually decreasing values of V and Q. Capacitance is just a simple ratio between Q and V. Once the charge starts to move you can substitute tI for Q but that doesn't necessarily give you a prediction about how I changes over time as Q and V decrease. Still, theoretically, you could place the capacitor in a pulse forming network and keep the voltage drop to a minimum throughout most of the pulse. Especially with such a relatively long pulse. If you assume the presence of sufficient inductance to keep V from dropping until the end of the pulse then it seems like this equation should be valid because V would be more or less constant for the network as a whole.
But can you really substitute tI for Q? Both equations represent definitions. The first for capacitance and the second for current. So clearly each is true individually and no matter what kind of crazy electrical machine you design current is always going to be flow of charge per unit time and capacitance is always going to be stored charge per unit voltage. Defining charge as time current in amp seconds does seem kind of strange, but as long as you have some kind of moving charge it would seem to be valid. Before the charge starts to move you don't really have a current, but as soon as the plates start giving up their charge you do have a (transient) current. So it does seem like you should be able to substitute tI for Q after t=0. Still I can't help thinking somehow that these equations were just not meant to be used this way.
It's clearly true that for a given stored charge on the plates that t and I will be inversely proportional. The greater the discharge time the smaller the possible current and the greater the current the smaller the possible discharge time. I think it is that relationship combined with the fact that capacitance for a given charge Q on the plates is inversely proportional to the voltage across the plates due to the definition of capacitance as Q/V which gives the first equation its meaning in terms of my application. But does this inverse relationship of t and I with respect to Q account for the fact that V, and therefore I, is not going to be a constant? I don't think it does account for that. The relationship between tI and Q is too simple. For this reason I am thinking that the other equation may be better for a continually changing voltage. But if you assume a constant voltage due to a PFN then this equation should work just as well as the other.
It's true that V is inversely proportional to C for a given value of Q and that t and I will always be inversely proportional for a given value of Q, but does it necessarily follow from those relationships that I can determine I for a given t or t for a given I? As Jim pointed out, after t=0, V is continuously dropping. As V drops so does Q. As Q drops so does the tI product. I suppose you could re-evaluate Q for each change in V that you want to examine using Q=CV. I guess Q would sort of be analogous to potential energy in the other equation. In the other equation what you really want to know is not the total potential energy, but the total potential energy that you can actually use. In this equation you want to know the total charge that you are actually going to use. The equation relates capacitance either to the product of discharge time and current produced from the discharging capacitor and the decreasing voltage across the plates or to the product of charge time and the current produced by the voltage source during the charge process with increasing voltage across the plates. Presumably these two scenarios are equivalent and the time t to charge is the same as the time t to discharge. The equation essentially predicts the charge/discharge behavior of a capacitor in terms of the quantity of charge on the plates, the magnitude of the electric field across them, and the time it takes for the plates to lose their charge when connected to a load. Electric potential energy is not explicitly mentioned, but it is there nevertheless, hidden in the voltage, which is just potential energy per unit charge in joules per coulomb.
The other equation relates capacitance directly to the electric potential energy stored in the capacitor to the voltage across the plates. It also derives from Q=CV but not quite so directly and is analogous to the potential energy equation in mechanics. Because it is derived so directly I would tend to trust it more, but it's not giving me an answer that I like, and I still don't really understand why that answer is so different from the other equation.
Ultimately what I want to know is how long will the capacitor be able to supply a significant amount of current and voltage. Both equations seem to provide an answer. Both seem to be valid, although the charge-current equation seems to be better for a static voltage. In both cases you can account for the diminishing voltage from the capacitor by just evaluating the equation at multiple voltages. I wish I were still an EE major. These are exactly the sort of questions I used to love torturing my poor professors with.