Multiple birth and cut algorithm

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Discussion Overview

The discussion revolves around the multiple birth and cut algorithm, particularly its application in detecting nuclei in histopathology images. Participants explore the potential of this algorithm compared to other methods, such as the Hough transform with simulated annealing.

Discussion Character

  • Exploratory
  • Technical explanation
  • Homework-related

Main Points Raised

  • One participant expresses enthusiasm for the multiple birth and cut algorithm, suggesting it could address challenges in detecting nuclei in histopathology images.
  • The same participant notes dissatisfaction with their current method using the Hough transform and simulated annealing, citing incorrect underlying assumptions.
  • Another participant questions the specific plotting needs related to the algorithm and suggests exploring software options like Paraview or Mayavi.
  • A different participant acknowledges the suggested software but indicates it does not meet their specific requirements while expressing gratitude for the information.
  • One participant shares a link to an implementation of the algorithm, indicating it may be of interest to others.

Areas of Agreement / Disagreement

The discussion does not present a consensus, as participants express varying levels of understanding and interest in the algorithm and its applications. There are also differing opinions on the suitability of suggested software tools.

Contextual Notes

Participants have not fully clarified the specific requirements for their tasks, and there may be assumptions about the familiarity with the algorithm and related software that are not explicitly stated.

Who May Find This Useful

Individuals interested in image processing, particularly in the context of histopathology, as well as those exploring advanced algorithms for detection tasks.

physical101
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Hi there

I have found an algorithm within the literature that is known as multiple birth and cut.

It is in a word fantastic! It seems like it has the potential to solve a problem I have been fighting with.

I have been tasked with detecting nuclei in histopathology images and so far the best things I could come up with is using the hough transform with simulated annealing. It takes time and the underlying assumptions are all wrong!

Does anyone know of any opensource software for the above algorithm? I would say that it would be worth doing it from scratch but the mathematics is too complicated (markov random field strategies and gibbs sampling to name but a few).

Thanks for looking guys

D
 
Technology news on Phys.org
I don't quite understand what you need to plot, but have you looked into Paraview or Mayavi?
 
They are pretty epic but not quite what I'm after. However I know a few people who will be interested so thanks for the links
 
oops...sorry...wrong thread...I thought my post hadn't gone through to this thread, when I saw a page without my posting...too many Chrome tabs open...:confused:
 

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