I don't know what you mean by particle physics, and so, I run the risk if giving the wrong answer to your question...but just in case...
...I would think that a differential cross section is the one that you have as you integrate to determine a total cross sectional area. For example, if you have an oddly shaped surface where the profile along the bottom is straight but the one along the top is not, you cannot simply multiply width times height to calculate the cross section; instead, you need to describe the line along the top as a function of the width, say x, multiply by a delta length, say dx, and now you have a differential area that can be integrated...is this what you are talking about?