For a top PhD program in econ, having a grasp on real analysis will be pretty helpful. The more math you can handle, the better. For instance, at UChicago, graduate admissions filter your undergrad courses into math and econ categories.
More to the point though, I think understanding mathematical analysis will be more helpful than pursuing ODE and then PDE. Analysis gives you the tools to study ODE/PDE deeply, and to understand the ramifications and limitations behind the methods used in DE courses. Proper understanding of probability theory and game theory also requires a good grasp on real analysis. But even if you take a look at a basic microecon grad text such as Varian, you'll see the ideas of analysis pop up.
Now to strictly answer your question, PDE doesn't seem that important to have for PhD admissions, unless you're planning on getting a PhD in Math Finance. It's certainly unlikely to show up in basic graduate sequences in econometrics, price theory, micro. Differential equations do show up in economic growth, but a good understanding of ODEs should suffice for the foundations of the subject.
Finally, a basic computationally-focused course in PDE will not be that difficult provided you have a good grasp on ODEs. PDE is a very deep subject, but there are very common methods for dealing with linear PDEs. These include the method of characteristics, Fourier transforms, and separation of variables, none of which is particularly difficult to grasp. Only the first of these few methods really requires a basic range of multivariable calculus techniques. However, to fully grasp basic linear PDE theory (e.g. issues of convergence, regularity, etc.), you must be familiar with basic graduate analysis (i.e. measure theory) and vector calculus.
In any case, taking multivariable calculus is a good idea, because basic undergrad micro/macro involves solving consumer choice optimization problems. The basic tool here is Lagrange multipliers, which properly belongs under MV calc. However, you can pick up on basic MV calc on your own and can spend your credits on other crucial courses such as real analysis.