I assume that ##\phi## is the metric perturbation and that you mean
$$ \phi_k = - C_1(k) \frac{\dot{H}}{H^{2}}.$$
Note the ##H^2## in the denominator.
If so, there is kind of a bizarre trick to use here. First, the fact that ##H = \dot{a}/a##, implies that
$$ a dt =H^{-1} da .~~~(*)$$
The idea then is to integrate by parts to show that
$$ \int a dt = \int H^{-1} da = H^{-1} a- \int a~ d \left( H^{-1} \right).$$
It seems weird, but this is formally ok to do. Now, we want to write
$$ d \left( H^{-1} \right) = \frac{ d \left( H^{-1} \right)}{dt} dt $$
and use (*) again to write the ##dt## integral as one over ##da##. Then it's one more integration by parts to get the term you want, plus another integral that you can see is small for ## \dot{H} \ll H^2##.
I had to give a lot of the problem away to explain the trick, but it's probably confusing enough that you still have a lot of work to do for it. I'll try to help with followup questions as needed.