DNA is Held Together by a Watery Environment

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Recent discussions highlight a significant shift in understanding DNA stability, emphasizing the role of hydrophobic forces over previously believed hydrogen bonds. Historical research, such as Herskovits' 1962 study, indicated that DNA's helical configuration is influenced by organic solvents, revealing that denaturation correlates with increased absorbance and changes in optical rotation. The findings suggest that the effectiveness of denaturants increases with chain length and hydrocarbon content, supporting the importance of hydrophobic interactions. Additionally, a 1998 study by Matray and Kool demonstrated that artificial DNA base pairs can function without hydrogen bonding, further reinforcing the idea that hydrophobic effects and base stacking are crucial for double-stranded DNA stability. This evolving perspective challenges long-held beliefs about DNA's structural integrity and highlights the complexity of molecular interactions in biological systems.
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What were scientists wrong about? We have already known this for over half a century:

Herskovits. Nonaqueous solutions of DNA: Factors determining the stability of the helical configuration in solution. Arch. Biochem Biophys 97: 474 (1962)

Abstract:
The disorganization of the aqueous helical configuration of deoxyribonucleic acid (DNA) by a number of structurally related organic solvents has been investigated. In all the solvents investigated, denaturation is accompanied by 35–50% increase in absorbance (at 259 mμ) and a decrease in optical rotation (at 436 mμ) of 200–350 °. The following observations have been made: (a) The effectiveness of the denaturant increases with both chain length and increasing hydrocarbon content. Thus ethyl and propyl alcohols were found to be more effective than methanol. (b) The alkyl-substituted solvents N,N′-dimethylformamide, dimethyl sulfoxide, and tetramethylurea are the most effective denaturants among the various solvents employed. The midpoints of the denaturation transition due to these solvents in the presence of 1–5 × 10−2M salt, range from 19 to 27 mole % (57–62 vol.%), and the changes produced in optical rotation (at 436 mμ) upon denaturation are of the order of −300 to −350 °. (c) N,N′-dimethylformamide is a more effective DNA denaturant than formamide. (d) Increasing the hydroxyl content of the solvent, on the other hand, had no significant effect; the denaturation midpoints in methanol-water and ethylene glycol-water mixtures (in the presence of 0.5–5 × 10−2M salt) occur at 80 ± 1 mole % (90 ± 2 vol.%) of the nonaqueous component. These observations demonstrate the importance of hydrophobic forces and argue against the assignment of the stability of the aqueous configuration of DNA solely to hydrogen bonds.
(emphasis mine)
https://www.sciencedirect.com/science/article/pii/0003986162901108
The fact that the hydrophobic effect and base stacking are key to the stability of double stranded DNA has been demonstrated in numerous experiments, including a classic study from over two decades ago, where chemists synthesized an artificial DNA base pair that works without hydrogen bonding:

Matray and Kool. Selective and Stable DNA Base Pairing without Hydrogen Bonds. J Am Chem Soc 120:6191 (1998)
https://pubs.acs.org/doi/10.1021/ja9803310
 
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