The cosmic rays reaching the Earth's surface may be mostly hydrogen nuclei, traveling fast and stripped of electrons. But we notice those energetic cosmic rays most because they have a significant mass relative to beta particles and there is a magnetic selection processes in their path to Earth.
Any body will sweep up slow electrons as well as being plastered with fast protons, we do not know the relative charge population statistics, or the capture cross-section, so we cannot be sure on which side of zero the net charge will fall. My assumption is that the electron gathering or repelling ability of a body traveling through outer space will be determined by it's present charge, so we can expect it to stabilise near neutral.
When examining the Earth–Ionosphere capacitor we see that the negative ground, relative to the positive ionosphere has a gradient that is self-regulating. That is evident because charges move in the atmosphere, as insulation it is on the edge of breakdown. Any change in potential gradient will change the circulating currents and so regulate the potential gradient.
The fact that the Earth's surface is negative relative to the ionosphere shows that the charge on the surface is not due to incident protons alone and that other more significant processes must be going on.
All things are relative. Three plates make two series capacitors. The middle conductive plate will form an equipotential. Some electrons on that plate will be attracted towards the surface on the more positive side, while being repelled away from the surface on the negative side, leaving some holes. So there will be a charge separation across that plate. That charge distribution is the displacement current that flowed when the capacitor was charged. Since the plate is a good conductor, (not a capacitor), there will be no voltage difference on the conductive middle plate.
Think of two electrolytic capacitors connected in series. Is the common terminal one or two conductors ?