Quantum mechanics is used on the level of individual interactions between neutrons and nuclei. In addition to experiment, QM is used to determine microscopic cross-sections, particularly for resonance scattering and absorption. In diffusion and transport theory, we use the macroscopic cross-sections (product of atomic density and microscopic cross-sections) and fluxes (and currents), so we don't explicitly use QM. The flux (or current) treat neutrons as a large population of which some fraction in each energy range will undergo some reaction, e.g., absorption or scattering. Scattering means that a fraction of one energy group will move into another energy group, usually downward for neutrons not in kinetic (thermal) equilibrium with their environment.
One sees discussions of QM in textbooks on nuclear physics, e.g., Kenneth Crane's Introductory Nuclear Physics, Chapter 11, Nuclear Reactions, and Chapter 12, Neutron Physics, or John Lamarsh's, Nuclear Reactor Theory, Chapter 2.