Choosing zero for the time is arbitrary. You can start the stopwatch at any instant.
When you say that the voltage is V0sin(ωt), it is a periodic function, the same pattern repeated from infinite time of past to infinite time of future... In this case, the current is I=-V0/(Lω)cos(ωt).
If you mean to switch the AC source to the inductor at t=0, it is a different problem then. The generator voltage is the following function: V=0 if t<0, V=V0sin(ωt) if t≥0.
The solution for the current will not be the simple cosine function as before, and the voltage across the inductor is not the same as the generator voltage. You can not ignore the resistances both that of the coil and the internal resistance of the source. The current has a transient term which decays with time. The solution is more complicated, but the current is indeed zero at t=0.
ehild