Didn't you just do a "volume of a solid of revolution" calculation?
Didn't you use the method of disks?
Lessee ... the disk between y and y+dy will have area A(y) and width dy, so it's volume is dV = A(y).dy
You need the volume between the bottom and y=h ... in the problem "h" is not a "small interval", it is a value of y.
For the rest ... you are given the volume flow rate of water dV/dt, and you need dh/dt and dA/dt.
If you know how the height changes with time already, and you know how the area depends on the height ...