Well, if we only look at a linearized, gravity-driven wave-train propagating over a flat bottom of height "h" , the phase velocity "c" of the wave is:
c=\sqrt{gh}\sqrt{\frac{tanh(kh)}{kh}}, k=\frac{2\pi}{\lambda}
wher "k" is the wave-number, and "tanh" is the hyperbolic tangent function.
Since the phase velocity generally depends on "k", we say that these waves are "dispersive", since an initial signal composed of wave components of different wave-lengths would become twisted and distorted due to the different component velocities we'd have.
In the "shallow water" limit, i.e kh<<1 (ratio height/wavelength tiny), this reduces to the non-dispersive relationship c=\sqrt{gh}
That is, in shallow water, an initial signal RETAINS its form as it propagates.
As for amplitude-effects:
In general, this is what we call a "non-linear" effect, which means that we can only see them if we retain the non-linear terms of the constitutive differential equations (typically, potential flow with a free surface is sufficient here, i.e, neglecting foremost the effects of friction (either from internal viscosity or interaction with, say, wind/water)/vorticity)
Typically, we will also see amplitude dispersion as well, along with wavenumber dispersion, and the more energetic high-amplitude waves travel faster than low-amplitude waves.
But, an interesting case is given by the so-called solitons, an isolated trough or peak, in which the dispersive effects cancels out, so that the initial signal, although composed of different wave-lengths, can propagate undistorted.
Further, effects of surface tension comes into play at tiny wave-lengths, the shortest traveling faster
(this is a "linear" effect)
They and other waves are, of course, subject to the forces of friction,which slowly "burn off" the energy contained in them.
But, the observable effect of friction is amplitude-reduction, rather than reduction of phase velocity.
Finally:
As for the intrusive body's parameter's effects on the initial wave signals' shapes, I wouldn't hazard to guess at all. I have a very strong suspicion that nobody would..