Sorry allow me to clarify. When talking about the desynchronization of the comoving clocks I am referring specifically to Einstein synchronization of
ideal clocks. A clock is ideal if it is parametrized by proper time i.e. if its 4-velocity satisfies ##\vec{u}\cdot \vec{u} = -1## (in natural units). In our Born rigid rod scenario, a comoving clock will therefore be an ideal clock if, in the Rindler chart, we have ##\vec{u} = \frac{1}{x}(1,0,0,0)## along the world line of the clock. Therefore two comoving ideal clocks will always tick at different rates given by ##\frac{d\tau_1}{d\tau_2} = \frac{x_1}{x_2}## hence we cannot Einstein synchronize two such comoving ideal clocks permanently because even if the clocks are synchronized initially they will desynchronize due to the difference in ticking rates; one of the consistency relations that Einstein synchrony has to satisfy is that two clocks synchronized initially remain synchronized permanently.
So in other words I'm talking about
proper time synchronization; if that was unclear I apologize but Einstein synchrony normally refers to proper time synchronization in standard SR texts so I thought it would be clear. Therefore we cannot synchronize the proper times of comoving clocks in our Born rigid rod scenario using the Einstein synchronization convention. It turns out that a congruence of comoving clocks with 4-velocity field ##\vec{u}## is proper time synchronizable (in the exact sense elucidated above) if and only if the congruence has a 4-velocity field of the form ##\vec{u} = \vec{\nabla}t##, which immediately implies that the congruence is geodesic and vorticity-free i.e. ##\vec{a} = \nabla_{\vec{u}}\vec{u} = 0## and ##\vec{\omega} = \vec{\nabla}\times \vec{u} = 0## respectively. The congruence of comoving clocks in our Born rigid rod scenario is obviously vorticity-free but it is
not geodesic therefore the comoving clocks are not proper time synchronizable, as stated above.
As an aside, note therefore that in SR the only congruences of ideal comoving clocks that can be Einstein synchronized are those of
inertial clocks because in SR a congruence of ideal comoving clocks satisfies ##\vec{a} = 0## and ##\vec{\omega} = 0## if and only if the clocks are inertial. This gives us back the rigid coordinate lattice of inertial clocks talked about at the inception of the thread.
The vanishing vorticity ##\vec{\omega} = 0## of this congruence is in and of itself a very important property of the congruence. To start with let's write ##\vec{\nabla}\times \vec{u} = 0## in a mathematically equivalent form for this congruence. Notice that we can write ##\vec{u} =\frac{1}{x}(1,0,0,0)## as ##\vec{u} = \frac{1}{x}\vec{\nabla }t## where ##t## is as usual the global Rindler coordinate time. This means that
all of the comoving clocks have world lines which are orthogonal to the surfaces ##t = \text{const}##. These ##t = \text{const}## surfaces are exactly the simultaneity surfaces shared by all of the comoving clocks! In other words the fact that ##\vec{\omega} = 0##, or equivalently ##\vec{u} = \frac{1}{x}\vec{\nabla }t##, means that if we slice this congruence with the surface ##t = \text{const}##, that is, we find the intersection of ##t = \text{const}## with the world lines of all the comoving clocks, then the resulting events will be simultaneous for
all of the comoving clocks. The ##t = \text{const}## "global" simultaneity surfaces ("global" because all of the comoving clocks share these simultaneity surfaces) are depicted here:
http://upload.wikimedia.org/wikipedia/commons/5/56/Rindler_chart.svg
Recall that two comoving clocks are proper time synchronizable if and only if they belong to a congruence of comoving clocks with 4-velocity field ##\vec{u} = \vec{\nabla}t##. In our Born rigid rod scenario we instead have ##\vec{u} = \frac{1}{x}\vec{\nabla}t##. I hope it's clear to you now what the difference is: while the comoving clocks all share common simultaneity surfaces ##t = \text{const}##, their proper times cannot be Einstein synchronized because of the factor ##\frac{1}{x}## that causes ideal clocks at different locations on the rod to tick at different rates.
EDIT: So what I'm trying to say is if you want clock synchronization along the rod then you need to use non-ideal comoving clocks (except for the clock of proper acceleration ##g = 1## of course) i.e. you need to have the comoving clocks read something other than proper time. Exactly what kind of time each one reads is dependent upon the factor by which you need to mechanically readjust the clock rate of each comoving clock so as to tick uniformly with the ideal clock of proper acceleration ##g = 1##.