The \varepsilon= L\frac{di}{dt} won't make any difference in this particular relationship for a single inductor. If you close a switch to introduce a battery into an RL circuit (using your handwound coil), and measure the relationship between the current and voltage across the coil, it will be the same if use the other clockwise vs. counterclockwise wound coil. The equation \varepsilon = L\frac{di}{dt} doesn't depend on the coil's polarity.
On the other hand, the application of Lenz' Law, \varepsilon = -\frac{d \Phi}{dt} does make a difference. Changing the polarity of the coil (clockwise wound or counterclockwise wound) will change the direction of the magnetic field within the coil, all else being equal. In Lenz law, the magnetic flux, \Phi is a scalar quantity, but it can take on both positive and negative values. All else being the same, it is to the polarity of the coil that has an effect on whether \Phi is positive or negative, and thus whether \frac{d \Phi}{dt} is positive or negative (again, all else being the same).
Set up a RL circuit for your clockwise wound coil and place a compass near one end (and make note of which end). Notice how the coil deflects the compass needle (take careful notes, as the compass needle deflection may change with time). Now switch out the clockwise coil with the counterclockwise coil and set everything else up the same. The compass needle should deflect in the opposite direction than before.
In summary, in the experiment, the circuit's voltage and current were the same, but the difference was in the way the compass needle was deflected. The circuit behaved the same either way, but the direction of the magnetic field within the coil changed direction.
In ending, your choice of the winding clockwise vs counterclockwise determines which end of the coil is the north pole and which end is the south pole at a given time in a given circuit.
*(You don't really need to swap out coils though, you could change the orientation of the coil that you already have, without changing its electrical connections in the circuit. Whichever way flips your thumb's direction when using right-hand-rule.)