Your new design looks really good and the spacers are really critical in holding the two arms aligned and adding transverse rigidity to the piston structure. You just were one step ahead of me with the spacers, the only reason I opened this thread this morning was to suggest to you that, even though we had added the third tube, adding the spacer you had suggested would be a good idea.
Most designs are a progressive process and that is why your sending me your update pictures is really a help in my being able to visualize where revisions and/or additions might be needed.
With respect to my stress analysis on these parts, it is a combination of calculation and judgement, because composite structures like you are building are very hard to fully accurately analyse using basic equations. As a result, as we go along in some cases, I will suggest something that I know will add strength and rigidity to the structure but that I cannot exactly calculate amount of benefit, so if I see something of that type and it is reasonable to add it then I tend to recommend doing so.
For me, a big part of what guides me is that, even though your machine is manual and relatively small it is working with very high loads. To put that in perspective, a 50 ton cargo capacity railway boxcar weighs approximately 250,000 lbs and even at the reduced 2550 psi compressing pressure, the load on your links and axles, etc is 183,000 lbs. So in effect you are making parts that should be able to safely lift 3/4 of that boxcar, including its wheel sets.